DRAM.py annotate question - minimum contig length

[nataliesarno]

I am attempting to annotate metagenome assembled genomes. Generally, when our lab assembles genomes the minimum contig length used in our assemblies are 2500-3000. I tried to run DRAM.py annotate on my MAGs and encountered the error that "No sequences were longer than the min_contig_size" in my .faa files. When I checked the DRAM.py annotate code here I noticed the min_contig_size is 5000. Will changing this to 2500 (our labs' contig size during assembly) mess with the DRAM annotations? Or am I possibly doing something else wrong to encounter this error?