-
Notifications
You must be signed in to change notification settings - Fork 10
Open
Description
When I try to run hic2convert with more than one processor, I get the following error -
Traceback (most recent call last):
File "/Users/aakashsur/.virtual/default/bin/hic2cool", line 8, in <module>
sys.exit(main())
File "/Users/aakashsur/.virtual/default/lib/python3.8/site-packages/hic2cool/__main__.py", line 86, in main
hic2cool_convert(args.infile, args.outfile, args.resolution, args.nproc, args.warnings, args.silent)
File "/Users/aakashsur/.virtual/default/lib/python3.8/site-packages/hic2cool/hic2cool_utils.py", line 936, in hic2cool_convert
tmp_chunk = parse_hic(req, pool, nproc, chr_key, unit, binsize,
File "/Users/aakashsur/.virtual/default/lib/python3.8/site-packages/hic2cool/hic2cool_utils.py", line 359, in parse_hic
result_all.extend(mpi_result[mpi].get())
File "/Users/aakashsur/.python/lib/python3.8/multiprocessing/pool.py", line 771, in get
raise self._value
NameError: name 'reqarr' is not defined
It runs normally when I just have one processor.
Metadata
Metadata
Assignees
Labels
No labels