Mouse Genome Radiality (mESC / mNPC)

Github Repository with scripts used in Salviati-Yip et al

Scripts:

• GPSeq
• RNA-seq
• ATAC-seq
• Hi-C
• Chromflock

All codes for plotting figures used in the manuscript are found in visualization.
If loading source data, all figures can be recreated on the fly without the need of data processing.

Datasets and Annotations:

• Raw Data: All sequencing data produced in this study are stored in ENA: PRJEB112822
• Genome Reference: Mouse mm39 genome (GRCm39) - Ensembl version 113
• Gene Annotation: Gencode vM36 basic annotation
• SNP Annotation: Mouse Genome Project (Release 2021)

Custom Genomic Annotations:

• GC content
• Gene Density