As many users seem to face similar problems with installing EDD with correct dependencies, I want to share the order and versions that I used to make it run on a Ubuntu machine.
conda create -n edd
conda activate edd
conda install python=2.7
conda install pip
pip install Cython==0.29.32 numpy==1.16.6
pip install scipy==1.2.3
pip install statsmodels==0.10.2
pip install pybedtools==0.8.2
pip install pysam==0.11.2.2
pip install edd
conda install bioconda::bedtools==2.31.1
edd -v
> edd 1.1.19
Props to https://github.com/rabdill !
(edd) user@machine:~$ conda list
# packages in environment at /home/user/miniconda3/envs/edd:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
bzip2 1.0.8 hd590300_5 conda-forge
ca-certificates 2024.2.2 hbcca054_0 conda-forge
certifi 2019.11.28 py27h8c360ce_1 conda-forge
cython 0.29.32 pypi_0 pypi
edd 1.1.19 pypi_0 pypi
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 13.2.0 h807b86a_5 conda-forge
libgomp 13.2.0 h807b86a_5 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libsqlite 3.45.1 h2797004_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
logbook 1.5.3 pypi_0 pypi
ncurses 6.4 h59595ed_2 conda-forge
numpy 1.16.6 pypi_0 pypi
openssl 3.2.1 hd590300_0 conda-forge
pandas 0.24.2 pypi_0 pypi
patsy 0.5.6 pypi_0 pypi
pip 20.1.1 pyh9f0ad1d_0 conda-forge
pybedtools 0.8.2 pypi_0 pypi
pysam 0.11.2.2 pypi_0 pypi
python 2.7.18 h42bf7aa_3
python-dateutil 2.8.2 pypi_0 pypi
python_abi 2.7 1_cp27mu conda-forge
pytz 2024.1 pypi_0 pypi
readline 8.2 h8228510_1 conda-forge
scipy 1.2.3 pypi_0 pypi
setuptools 44.0.0 py27_0 conda-forge
six 1.16.0 pypi_0 pypi
sqlite 3.45.1 h2c6b66d_0 conda-forge
statsmodels 0.10.2 pypi_0 pypi
tk 8.6.13 noxft_h4845f30_101 conda-forge
tzdata 2024a h0c530f3_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zlib 1.2.13 hd590300_5 conda-forge
As many users seem to face similar problems with installing EDD with correct dependencies, I want to share the order and versions that I used to make it run on a Ubuntu machine.
Props to https://github.com/rabdill !