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1. uci-cbcl/esm-efficient uci-cbcl/esm-efficient Public

   Efficient implementatin of ESM family.

   Python 62 5

2. gagneurlab/MMSplice_MTSplice gagneurlab/MMSplice_MTSplice Public

   Tissue-specific variant effect predictions on splicing

   Jupyter Notebook 42 23

3. Genentech/decima Genentech/decima Public

   Decima is a Python library to train sequence models on single-cell RNA-seq data.

   Jupyter Notebook 44 8

4. uci-cbcl/EpiOut uci-cbcl/EpiOut Public

   A statistical method to detect, analyze and visualize aberrations in chromatin accessibility (ATAC-seq, DNase-Seq) and quantify its effect on gene expression.

   Python 2

5. kipoi/kipoiseq kipoi/kipoiseq Public

   Standard set of data-loaders for training and making predictions for DNA sequence-based models.

   Python 82 14

6. figure_panel figure_panel Public

   Python 3 1