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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Add checkpointing documentation SKIP_CI Completely skips the CI pipeline
#1042 opened Aug 15, 2025 by balvisio Loading…
5 of 9 tasks
1
adds block sampling
#1040 opened Aug 14, 2025 by skothenhill-nv Loading…
1 of 5 tasks
1
add changed files to github workflow
#1038 opened Aug 13, 2025 by pstjohn Loading…
fix evo2 tests with high memory consumption - DO NOT REVIEW - DO NOT MERGE
#1035 opened Aug 12, 2025 by broland-hat • Draft
9 tasks
@broland-hat
1
update root README.md for open file count error documentation Improvements or additions to documentation good first issue Good for newcomers
#1034 opened Aug 12, 2025 by broland-hat • Draft
9 tasks
@broland-hat
1
Add Mamba model support to Evo2 performance benchmarks
#1032 opened Aug 11, 2025 by nvmvle Loading…
3 of 9 tasks
1
Llama3 variant of Evo2 model
#1031 opened Aug 9, 2025 by jstjohn • Draft
9 tasks
@jstjohn
1
Edawson/scdl schema
#1030 opened Aug 8, 2025 by edawson Loading…
1 of 9 tasks
1
10
fix confidence MDLM sampling and add ar and margin ciflow:notebooks Run Jupyter notebooks execution tests INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline
#1029 opened Aug 7, 2025 by nvdreidenbach Loading…
feat: Add Evo2 fine-tuning partial-conv benchmarking
#1028 opened Aug 7, 2025 by nvmvle • Draft
1 of 5 tasks
2
Entropic time scheduler ciflow:notebooks Run Jupyter notebooks execution tests INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline
#1024 opened Aug 5, 2025 by btrentini Loading…
3 of 7 tasks
29
Add long generation logic
#1022 opened Aug 4, 2025 by jwilber • Draft
2
Bump 3rdparty/Megatron-LM from f8d3e2e to dee9e78 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#1021 opened Aug 4, 2025 by dependabot bot Loading…
2
Evo 2: Accuracy and speed inference/generation improvements
#1020 opened Aug 1, 2025 by antonvnv Loading…
9 tasks
2
Bionemo Evo2 to vortex (pytorch inference) converter
#1019 opened Aug 1, 2025 by jstjohn • Draft
9 tasks
1
GC content tag test for evo2
#1018 opened Aug 1, 2025 by jstjohn • Draft
1
Jwilber/add interactives in docs
#1014 opened Jul 31, 2025 by jwilber Loading…
10
Add summary to contributing.md SKIP_CI Completely skips the CI pipeline
#1006 opened Jul 28, 2025 by edawson Loading…
5 of 9 tasks
1
DRAFT: Temporal GF
#998 opened Jul 22, 2025 by camirr-nv Loading…
9 tasks
1
add trivy container scan
#997 opened Jul 22, 2025 by pstjohn Loading…
Bump rust from 1.86.0 to 1.88.0 dependencies Pull requests that update a dependency file docker Pull requests that update docker code
#963 opened Jun 30, 2025 by dependabot bot Loading…
2
Fix jupyter_core and protobuf vulnerabilities
#960 opened Jun 26, 2025 by balvisio Loading…
1 of 9 tasks
5
[Draft] Reuse Test Data Across Multiple Tests For Geneformer
#955 opened Jun 24, 2025 by nvmvle • Draft
4 of 9 tasks
5
Add Unit Test for Genformer Training Script INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#943 opened Jun 16, 2025 by nvmvle Loading…
4 of 9 tasks
10
draft: investigate perf oscillation
#937 opened Jun 11, 2025 by dorotat-nv Loading…
9 tasks
1
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