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  1. essential-function-agent essential-function-agent Public

    Neurohybrid agent for essential gene function prediction: knowledge graph + language models (Evo2 DLM, ESM-2 PLM) + flux balance analysis + LLM reasoning. Prototype for JCVI-syn3A and E. coli K-12.

    Python

  2. fungal_evo2 fungal_evo2 Public

    Fine-tuning Evo 2 on fungal genomes.

    Jupyter Notebook

  3. G-lucidum-hybrid-genome-assembly G-lucidum-hybrid-genome-assembly Public

    A repository for my genome assembly project for the JGI-sequenced Ganoderma lucidum 10597 SS1.

    Jupyter Notebook