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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 45 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 37 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 27 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 17 15

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 187 repositories
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 2 Apache-2.0 2 57 10 Updated Aug 22, 2025
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 79 9 Updated Aug 20, 2025
  • atlas-experiment Public

    Experiment page for bulk Expression Atlas

    ebi-gene-expression-group/atlas-experiment’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 20, 2025
  • wf-bulk-indexing Public

    Running logic for the indexing tasks for Bulk Expression Atlas

    ebi-gene-expression-group/wf-bulk-indexing’s past year of commit activity
    Python 0 1 0 3 Updated Aug 18, 2025
  • atlas-gtex-bulk Public

    Atlas analysis for controlled-access GTEx bulk datasets

    ebi-gene-expression-group/atlas-gtex-bulk’s past year of commit activity
    Python 0 0 3 2 Updated Aug 15, 2025
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 5 1 Updated Aug 15, 2025
  • atlas-experiment-fetcher Public

    Fetches and formats GXA experiment data into structured YAML

    ebi-gene-expression-group/atlas-experiment-fetcher’s past year of commit activity
    Python 0 0 1 0 Updated Aug 15, 2025
  • atlas-k8s-ci-environment Public

    Collection of Kubernetes manifests for CI of Expression Atlas web applications

    ebi-gene-expression-group/atlas-k8s-ci-environment’s past year of commit activity
    Shell 2 Apache-2.0 3 1 2 Updated Aug 13, 2025
  • annotare-help Public

    Help pages for functional genomics submissions

    ebi-gene-expression-group/annotare-help’s past year of commit activity
    HTML 0 2 0 0 Updated Aug 12, 2025
  • atlas-heatmap Public

    Heatmap visualizing bulk Expression Atlas data

    ebi-gene-expression-group/atlas-heatmap’s past year of commit activity
    JavaScript 8 2 2 0 Updated Aug 11, 2025
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