Skip to content

Update terms with latest resources #128

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 3 commits into from
Feb 6, 2024
Merged

Update terms with latest resources #128

merged 3 commits into from
Feb 6, 2024

Conversation

bgyori
Copy link
Member

@bgyori bgyori commented Jan 23, 2024

This PR updates the default Gilda terms file with the latest version of resources such as UniProt, HGNC, MeSH, GO, etc. The FamPlex benchmark got better due to the recognition of a new EFO term, and the BioID evaluation also generally got better. There are a couple of regressions that I tracked down: nuclear chromatin and cytoplasmic chromatin are curated in the benchmark to obsolete GO terms which were replaced by a term (https://amigo.geneontology.org/amigo/term/GO:0000785) for which these are narrow synonyms and therefore there is no longer a correct GO term to ground these to.

@bgyori bgyori merged commit e4be647 into master Feb 6, 2024
@bgyori bgyori deleted the resource_update branch February 6, 2024 01:33
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant