NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

SRA Tools

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

NCBI C++ Toolkit package sources

SRA Outreach to the NIH Research Festival and ASHG 2025

Incremental building of phylogenetic distance trees

ncbi-vdb

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

NCBI C++ Toolkit package recipe