ARAMIS Lab

All

48 repositories

clinica
Public
Software platform for clinical neuroimaging studies
scikit-learn spm fsl ants freesurfer bids-format mrtrix3 brainweb python machine-learning
Python
•
Other
•88•257•72•11•Updated Aug 19, 2025Aug 19, 2025
clinicadl-zoo
Public
Community transforms and models for ClinicaDL.
Python
•
MIT License
•2•1•0•2•Updated Aug 18, 2025Aug 18, 2025
clinicadl
Public
Framework for the reproducible processing of neuroimaging data with deep learning methods
python deep-learning pytorch medical-imaging neuroimaging convolutional-neural-network brain-imaging alzheimer-disease
Python
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MIT License
•60•174•41•7•Updated Aug 18, 2025Aug 18, 2025
aramis-lab.github.io
Public
Website of the Aramis team
9•3•4•1•Updated Aug 12, 2025Aug 12, 2025
clinica-pydra-freesurfer
Public
Pydra tasks for FreeSurfer designed for Clinica
neuroimaging freesurfer pydra
Python
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Apache License 2.0
•1•5•0•2•Updated Aug 12, 2025Aug 12, 2025
clinica-pydra-petpvc
Public
Pydra tasks for PETPVC designed for Clinica
neuroimaging partial-volume-correction positron-emission-tomography pydra
Python
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Apache License 2.0
•0•0•0•1•Updated Aug 11, 2025Aug 11, 2025
clinica-pydra-ants
Public
Pydra tasks for ANTs designed for Clinica
neuroimaging ants pydra
Python
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Apache License 2.0
•0•0•0•1•Updated Aug 11, 2025Aug 11, 2025
pydra-brainstat
Public
Pydra tasks for BrainStat
neuroimaging pydra
Python
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Apache License 2.0
•0•0•0•2•Updated Aug 11, 2025Aug 11, 2025
clinica-pydra-fsl
Public
Pydra tasks for FSL designed for Clinica
neuroimaging fsl pydra
Python
•
Apache License 2.0
•1•3•0•1•Updated Aug 11, 2025Aug 11, 2025
leaspy
Public
LEArning Spatiotemporal Patterns in Python
Python
•
BSD 3-Clause "New" or "Revised" License
•8•6•54•2•Updated Aug 5, 2025Aug 5, 2025
ReadingGroup
Public
ARAMIS's Reading Group
1•2•0•1•Updated Jul 31, 2025Jul 31, 2025
tuto-doc
Public
Toy library for documentation tutorial (summer 2025)
Python
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MIT License
•7•0•0•1•Updated Jul 17, 2025Jul 17, 2025
clinicadl-website
Public
HTML
•0•0•0•0•Updated Jul 7, 2025Jul 7, 2025
meta-registries-SNDS
Public
HTML
•0•0•0•0•Updated Jun 30, 2025Jun 30, 2025
formation-SED-2025
Public
Jupyter Notebook
•
MIT License
•1•0•1•1•Updated Jun 26, 2025Jun 26, 2025
dev-meetings
Public
Materials for ARAMIS dev meetings.
0•0•0•0•Updated Jun 11, 2025Jun 11, 2025
aramis-beamer-minimalist
Public template
Minimalist beamer template made for Aramis lab’s fellows
TeX
•0•0•0•0•Updated May 27, 2025May 27, 2025
clinicadl-tutorials
Public
Tutorials for ClinicaDL.
Jupyter Notebook
•
MIT License
•3•2•0•0•Updated Apr 16, 2025Apr 16, 2025
miccai2022-stratifiad
Public
Python
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MIT License
•1•3•1•0•Updated Feb 18, 2025Feb 18, 2025
clinicaio
Public
Python library for input/output management of all Clinica projects.
Python
•
MIT License
•3•1•2•2•Updated Dec 2, 2024Dec 2, 2024
anomdetect_diffusion
Public
0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
MOOD_2024_public
Public
Python
•0•0•0•0•Updated Aug 23, 2024Aug 23, 2024
clinicadl_handbook
Public
Tutorial to use (new version of) clinicadl (>1.0.3)
learning deep neuroimaging
Jupyter Notebook
•
Creative Commons Zero v1.0 Universal
•7•2•5•1•Updated Jun 4, 2024Jun 4, 2024
pydra-spm
Public archive
Pydra tasks for SPM
python neuroimaging spm pydra
Python
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Apache License 2.0
•1•0•0•0•Updated Apr 2, 2024Apr 2, 2024
pydra-bids
Public archive
Pydra tasks for BIDS I/O
neuroimaging bids pydra
Python
•
Apache License 2.0
•1•2•0•1•Updated Apr 2, 2024Apr 2, 2024
pydra-dcm2bids
Public archive
Pydra tasks for dcm2bids
dicom bids pydra
Python
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Apache License 2.0
•0•1•0•0•Updated Apr 1, 2024Apr 1, 2024
dataset-registry
Public
Public dataset registry for dvc
0•0•0•0•Updated Nov 29, 2023Nov 29, 2023
NOW-2023
Public
Repository for the 2023 NeuroScience Open Workshop
Jupyter Notebook
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MIT License
•1•1•0•0•Updated Nov 24, 2023Nov 24, 2023
NOW-2023-lib
Public
Library to be used for NOW 2023 workshop
Python
•
MIT License
•0•0•0•0•Updated Nov 20, 2023Nov 20, 2023
clinicadl-pythae
Public
Python
•1•0•0•0•Updated Oct 5, 2023Oct 5, 2023