BioMCP: Biomedical Model Context Protocol
Automatic synthesis of RCTs
benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.
PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development
Python package that wraps around the ClinicalTrials.gov API
Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!
An information extraction system for free-text eligibility criteria
Open Source Clinical Content Analysis and Management System
TrialMatchAI aims to seamlessly match cancer patients to clinical trials based on their unique genomic and clinical profiles using AI
Deploy a Django app as a client on a laptop that is offline and securely sync the data with your server when you get back online.
A simple python package to search for clinical trials on EUDRACT.
Open-source statistical package in Python based on Pandas
A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
[JBI] Effective Matching of Patients to Clinical Trials using Entity Extraction and Neural Re-ranking
Code for the paper by Falet et al. (2022) "Estimating treatment effect for individuals with progressive multiple sclerosis using deep learning"
Parsers for clinical trials data from clinicaltrials.gov
Short scripts to demonstrate data available from MolecularMatch API (api key needed). Data includes clinical trials, drugs, publications, molecular information, bioinformatics, report generation and more.
Lightweight RTF composer for Python. Specializes in precise formatting of production-quality tables and figures.
ClinTrialFinder - AI-powered clinical trial discovery and ranking tool Find the most relevant clinical trials with GPT-4.1-mini filtering, Perplexity AI evidence analysis, and AI-powered ranking. Try via email: [email protected] - send clinical summary for instant trial matching. Perfect for researchers and medical professionals.
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