Suite of tools for use in genome assembly and consensus. Work in progress.
-
Updated
Mar 22, 2021 - Go
#
genome-mapping
Here are 7 public repositories matching this topic...
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
bioinformatics pipeline genomics bioinformatics-pipeline fasta smalt structurevariation genomes-comparison genome-mapping genome-alignment pav-sequences
-
Updated
Mar 5, 2018 - C
A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions
python genome proteins protein data-analysis fasta orfs genome-analysis orf genome-mapping sars covid-19 covid covid19 sars-cov-2 covid19-data protein-encoding proteinblast
-
Updated
Mar 25, 2022 - Jupyter Notebook
Implement and compare 2 pattern matching algorithms for genome mapping, one using suffix array and the other using Burrows-Wheeler Transform
-
Updated
Dec 22, 2020 - Python
Docker to run BWA for aligning sequences against a reference genome
-
Updated
Mar 6, 2018
This repository provides a comprehensive module on graphical pangenomics, guiding users through building, indexing, mapping, and visualizing pangenome graphs. The module runs on Google Cloud Platform using Jupyter notebooks and includes tools like PGGB, vg, BLAST, and Bandage.
bioinformatics gcp computational-biology population-genomics variant-calling high-throughput-sequencing genome-analysis genome-assembly illumina-sequencing read-mapping pangenomics genome-mapping pangenome-graph
-
Updated
Jun 6, 2025 - HTML
Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees
-
Updated
Jun 30, 2023
Improve this page
Add a description, image, and links to the genome-mapping topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the genome-mapping topic, visit your repo's landing page and select "manage topics."