Development repository for the Bioconductor package 'mixOmics '
Visual self-service analytics platform for big omics data.
From geospatial to spatial -omics
Picotti lab data analysis package.
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Open-Source Software for Omic Data Analysis and Visualization
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
Matrix dissimilarity from the differences of Moments and sparsity
An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators.
IAN: An Intelligent System for Omics Data Analysis and Discovery
The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.
Omics data integration with o2plsda
Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data
R package for de novo pathway enrichment using KeyPathwayMiner
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an overrepresentation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports
MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.
DECO :: Decomposing heterogeneous population cohorts for patient stratification and discovery of biomarkers using omic data profiling. R package
Add a description, image, and links to the omics topic page so that developers can more easily learn about it.
To associate your repository with the omics topic, visit your repo's landing page and select "manage topics."