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scikit-image

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Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. …

  • Updated May 13, 2022
  • Jupyter Notebook

My Jupyter Notebook, titled imagepreprocessing.ipynb, focuses on image processing tasks. It includes a function named plot_comparison that is designed to visually compare an original image with a processed version of that image. The function uses matplotlib to display the images side by side in grayscale, with customizable titles for each image.

  • Updated Jan 9, 2025
  • Python

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