Official git repository for Biopython (originally converted from CVS)
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Comparative Genomics Toolkit 3
Neural Networks for Protein Sequence Alignment
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Scoring multiple sequence alignments with Python
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.
Python Client Library for the G2P Portal API
A python library for decomposing and visualizing tandem repeat sequences
Papillomavirus genome annotation tool
The research of accuracy of searching cycles methods in symbolic sequences (time series) with presence of random noises.
Less-wrong single-file Numba-accelerated Python implementation of Gotoh affine gap penalty extensions for the Needleman–Wunsch, Smith-Waterman, and Levenshtein algorithms for sequence alignment
A light-weight python package for summarizing sequence coverage from SAM and BAM files
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