CALM (Calibrate and Analyze Lipid Membranes)

CALM is a command-line tool to swiftly analyze the large scale geometric properties of a lipid membrane. CALM is intended to be used on almost flat membranes to detect, for instance, the curvature induced by a protein. Additionally, it allows the calculation of parameters to translate the protein features to be understood by FreeDTS FreeDTS.

State

NOTE: Under developement!

Installation

Prerequisites

Put dependecies here.

Install CALM

Directly from GitHub

pip3 install git+https://github.com/weria-pezeshkian/Membrane_Shape_Analysis

From source

git clone https://github.com/weria-pezeshkian/Membrane_Shape_Analysis
cd Membrane_Shape_Analysis
python3 -m venv venv && source venv/bin/activate # Not required, but often convenient.
pip3 install .

Usage

For help on CALM and it's executables run:

CALM -h
CALM {calibrate,analyze,link, map} -h