Ontology for the description of human clinical features
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Aug 13, 2025 - Makefile
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phenotyping
Here are 114 public repositories matching this topic...
[WACV 2023] Information and scripts for the CropAndWeed Dataset
benchmark computer-vision deep-learning agriculture detection crop plants dataset classification farming segmentation object-detection phenotyping semantic-segmentation weed crops plant-monitoring weeds crop-classification weed-detection
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Apr 22, 2023 - Python
phenotyping pointcloud 3d-segmentation phenomics point-cloud-segmentation plant-segmentation plant-phenomics
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Jun 6, 2021 - MATLAB
An interactive corn plant point cloud segmentation and annotation software (version 2.0)
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Jul 4, 2021 - MATLAB
Self-Supervised Vision Transformers for multiplexed imaging datasets
unsupervised morphology phenotyping multi-channel single-cell fluorescence-microscopy-imaging high-content-screening multi-head-attention self-supervised-learning greyscale-image vision-transformer
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Jul 1, 2024 - Python
Plant Phenotyping APP
python machine-learning deep-learning artificial-intelligence plant phenotyping plant-growth plant-monitoring plant-phenotypes plant-phenotyping rootnav rootnav2 root-phenotyping
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Oct 15, 2024 - Python
Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping
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Jun 9, 2025 - Python
Minimum Information About a Plant Phenotyping Experiment
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Jul 3, 2025 - HTML
a fast and automatic segmentation pipeline for point cloud of maize shoots
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Jan 31, 2023 - MATLAB
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
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Oct 29, 2023 - Python
3-Demeter Capture is a tool for building 3-D point clouds from images
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Dec 26, 2018 - Python
Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)
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Oct 19, 2023 - Python
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
image-processing proteomics phenotyping multichannel single-cell spatial-data-analysis ome-tiff cell-segmentation whole-slide-imaging proteomics-data-analysis digital-slide-archive cell-cell-interaction multiplexed-imaging multiplexed-imaging-analysis mibiscope spatial-biology
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Feb 29, 2024 - JavaScript
Standard terms for annotating mammalian phenotypic data
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Aug 15, 2025 - Makefile
Internationalisation of the HPO content
language translation semantic-web ontology phenotyping phenotypes hpo hpo-translations phenomics phenotype-ontologies obofoundry
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Feb 27, 2023
Web-interface to the Biofuel Ecophysiological Traits and Yields Database (used by PEcAn and TERRA REF)
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Aug 21, 2024 - Ruby
Implementation of the 3D reconstruction pipeline optimized for plant branching structures.
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Feb 24, 2025 - C
PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
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Feb 11, 2025 - Python
Software program for generating synthetic datasets for genotypes and phenotypes
bioinformatics genomics genetics simulation julia generative-model polygenic-risk-scores phenotyping data-generator phenotypes synthetic-data polygenic-scores
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Jun 1, 2023 - Jupyter Notebook
Main repo for the running/training on the dataset presented in 'High-fidelity Wheat Plant Reconstruction using 3D Gaussian Splatting and Neural Radiance Fields'
machine-learning computer-vision plants dataset phenotyping 3d plant-growth wheat plant-phenotypes view-synthesis plant-phenotyping neural-radiance-fields gaussian-splatting
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Jul 10, 2025 - Python
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