The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
CoMorMent-Containers
Variational Inference of Polygenic Risk Scores
Software program for generating synthetic datasets for genotypes and phenotypes
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
quincunx: an R package to query, download and wrangle PGS Catalog data
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
Toolkit for the efficient construction and analysis of polygenic risk scores in R.
Python applications and libraries for working with PGS data and the PGS Catalog
quincunx: an R package to query, download and wrangle PGS Catalog data
(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files
Exploratory Framework for Genotype-Phenotype Prediction
GAUDI: a penalized regression based PRS method designed specifically for admixed individuals
A genomic disease prediction model using Polygenic Risk Scores (PRS), Lasso Logistic Regression, and SNP data from the 1000 Genomes Project. Explores different case-control splits, feature selection strategies, and performance evaluations using AUC metrics.
This repository contains the programming codes used in Genetic analysis of amyotrophic lateral sclerosis identifies contributing pathways and cell types https://advances.sciencemag.org/content/7/3/eabd9036
Polygenic risk modeling with latent trait-related genetic components
This short course is designed to equip scientists based in Africa with the skills and knowledge to perform polygenic risk scores (PRS) analysis.
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